K5WQV8_PHACS protein (Phanerochaete carnosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

K5WQV8_PHACS

WD_REPEATS_REGION domain-containing protein. (747 aa)

Predicted Functional Partners:

K5W853_PHACS

0.921

K5VYU3_PHACS

0.890

K5W3E1_PHACS

0.697

K5WC89_PHACS

0.691

K5V0K7_PHACS

0.669

K5VCM3_PHACS

0.669

K5WAK6_PHACS

0.669

K5WNE7_PHACS

0.669

K5VFM6_PHACS

0.604

K5US73_PHACS

0.531

Your Current Organism:

Phanerochaete carnosa

NCBI taxonomy Id: 650164
Other names: P. carnosa HHB-10118-sp, Phanerochaete carnosa HHB-10118-sp

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K5US73_PHACS	K5WQV8_PHACS	K5US73	K5WQV8	Actin-related protein 2/3 complex subunit 5; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development.	WD_REPEATS_REGION domain-containing protein.	0.531
K5V0K7_PHACS	K5VFM6_PHACS	K5V0K7	K5VFM6	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.658
K5V0K7_PHACS	K5VYU3_PHACS	K5V0K7	K5VYU3	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.691
K5V0K7_PHACS	K5W3E1_PHACS	K5V0K7	K5W3E1	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.691
K5V0K7_PHACS	K5WC89_PHACS	K5V0K7	K5WC89	Uncharacterized protein.	RING-type domain-containing protein.	0.844
K5V0K7_PHACS	K5WQV8_PHACS	K5V0K7	K5WQV8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.669
K5VCM3_PHACS	K5VFM6_PHACS	K5VCM3	K5VFM6	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.658
K5VCM3_PHACS	K5VYU3_PHACS	K5VCM3	K5VYU3	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.691
K5VCM3_PHACS	K5W3E1_PHACS	K5VCM3	K5W3E1	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.691
K5VCM3_PHACS	K5WC89_PHACS	K5VCM3	K5WC89	Uncharacterized protein.	RING-type domain-containing protein.	0.844
K5VCM3_PHACS	K5WQV8_PHACS	K5VCM3	K5WQV8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.669
K5VFM6_PHACS	K5V0K7_PHACS	K5VFM6	K5V0K7	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.658
K5VFM6_PHACS	K5VCM3_PHACS	K5VFM6	K5VCM3	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.658
K5VFM6_PHACS	K5W853_PHACS	K5VFM6	K5W853	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.658
K5VFM6_PHACS	K5WAK6_PHACS	K5VFM6	K5WAK6	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.658
K5VFM6_PHACS	K5WC89_PHACS	K5VFM6	K5WC89	Ribosomal_L2_C domain-containing protein.	RING-type domain-containing protein.	0.958
K5VFM6_PHACS	K5WNE7_PHACS	K5VFM6	K5WNE7	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.658
K5VFM6_PHACS	K5WQV8_PHACS	K5VFM6	K5WQV8	Ribosomal_L2_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.604
K5VYU3_PHACS	K5V0K7_PHACS	K5VYU3	K5V0K7	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.691
K5VYU3_PHACS	K5VCM3_PHACS	K5VYU3	K5VCM3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.691