STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dipZProtein dipZ. (545 aa)    
Predicted Functional Partners:
msrA
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.898
sigK
ECF-family sigma factor K; Belongs to the sigma-70 factor family.
 
  
 0.893
ahpC
Alkyl hydroperoxide reductase subunit C.
  
 0.887
trxB
Thioredoxin reductase.
  
 0.853
cskE
Anti-sigma factor.
     
 0.847
resC
Cytochrome c biogenesis protein.
 
  
 0.800
ccdA
Cytochrome c-type biogenesis protein.
 
  
 0.781
ctaC
Cytochrome c oxidase subunit II.
    
 
 0.777
ccsA
Cytochrome c biogenesis protein.
  
  
 0.775
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.745
Your Current Organism:
Corynebacterium ulcerans
NCBI taxonomy Id: 65058
Other names: ATCC 51799, C. ulcerans, CCUG 2708, CIP 106504, DSM 46325, IMET 11148, JCM 10387, NCTC 7910, PCM 554, PCM:554
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