Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ahpC | dipZ | Cul210931_1290 | Cul210931_0077 | Alkyl hydroperoxide reductase subunit C. | Protein dipZ. | 0.887 |
ahpC | rpoB | Cul210931_1290 | Cul210931_0372 | Alkyl hydroperoxide reductase subunit C. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.830 |
ahpC | trxB | Cul210931_1290 | Cul210931_2286 | Alkyl hydroperoxide reductase subunit C. | Thioredoxin reductase. | 0.934 |
ccdA | ccsA | Cul210931_0329 | Cul210931_0335 | Cytochrome c-type biogenesis protein. | Cytochrome c biogenesis protein. | 0.982 |
ccdA | dipZ | Cul210931_0329 | Cul210931_0077 | Cytochrome c-type biogenesis protein. | Protein dipZ. | 0.781 |
ccdA | resC | Cul210931_0329 | Cul210931_1997 | Cytochrome c-type biogenesis protein. | Cytochrome c biogenesis protein. | 0.879 |
ccdA | sigK | Cul210931_0329 | Cul210931_0075 | Cytochrome c-type biogenesis protein. | ECF-family sigma factor K; Belongs to the sigma-70 factor family. | 0.613 |
ccsA | ccdA | Cul210931_0335 | Cul210931_0329 | Cytochrome c biogenesis protein. | Cytochrome c-type biogenesis protein. | 0.982 |
ccsA | dipZ | Cul210931_0335 | Cul210931_0077 | Cytochrome c biogenesis protein. | Protein dipZ. | 0.775 |
cskE | dipZ | Cul210931_0074 | Cul210931_0077 | Anti-sigma factor. | Protein dipZ. | 0.847 |
cskE | sigK | Cul210931_0074 | Cul210931_0075 | Anti-sigma factor. | ECF-family sigma factor K; Belongs to the sigma-70 factor family. | 0.999 |
ctaC | dipZ | Cul210931_1500 | Cul210931_0077 | Cytochrome c oxidase subunit II. | Protein dipZ. | 0.777 |
dipZ | ahpC | Cul210931_0077 | Cul210931_1290 | Protein dipZ. | Alkyl hydroperoxide reductase subunit C. | 0.887 |
dipZ | ccdA | Cul210931_0077 | Cul210931_0329 | Protein dipZ. | Cytochrome c-type biogenesis protein. | 0.781 |
dipZ | ccsA | Cul210931_0077 | Cul210931_0335 | Protein dipZ. | Cytochrome c biogenesis protein. | 0.775 |
dipZ | cskE | Cul210931_0077 | Cul210931_0074 | Protein dipZ. | Anti-sigma factor. | 0.847 |
dipZ | ctaC | Cul210931_0077 | Cul210931_1500 | Protein dipZ. | Cytochrome c oxidase subunit II. | 0.777 |
dipZ | msrA | Cul210931_0077 | Cul210931_2158 | Protein dipZ. | Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.898 |
dipZ | resC | Cul210931_0077 | Cul210931_1997 | Protein dipZ. | Cytochrome c biogenesis protein. | 0.800 |
dipZ | rpoB | Cul210931_0077 | Cul210931_0372 | Protein dipZ. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.745 |
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