STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK27390.1LysM domain-containing protein. (306 aa)    
Predicted Functional Partners:
SEK27337.1
Acyltransferase.
       0.874
SEL37600.1
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
   
 
 0.837
SEK27494.1
Undecaprenyl-diphosphatase.
 
     0.771
SEK27441.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.760
SEL05812.1
Lipoprotein NlpD.
  
   
 0.708
SEK27550.1
Alkylated DNA repair dioxygenase AlkB.
       0.689
SEK27284.1
LysR family transcriptional regulator, carnitine catabolism transcriptional activator; Belongs to the LysR transcriptional regulatory family.
       0.624
SEL14606.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
  0.617
SEM04775.1
Murein DD-endopeptidase.
  
   
 0.607
SEK64633.1
Two-component system, NarL family, sensor histidine kinase BarA.
    
  0.587
Your Current Organism:
Halomonas daqiaonensis
NCBI taxonomy Id: 650850
Other names: CGMCC 1.9150, H. daqiaonensis, Halomonas daqiaonensis Qu et al. 2011, Halomonas sp. YCSA28, Halomonas sp. YCSA39, MCCC 1B00920, NCCB 100305, strain YCSA28
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