STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK30632.1Hypothetical protein. (195 aa)    
Predicted Functional Partners:
SEK30512.1
Paraquat-inducible protein A.
 
  
 0.959
SEK30567.1
Paraquat-inducible protein B.
 
   
 0.958
SEK30841.1
MFS transporter, CP family, cyanate transporter.
       0.665
SEK30728.1
Hypothetical protein.
       0.663
rhlE
ATP-dependent RNA helicase RhlE; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
       0.648
SEK30238.1
ATP-binding cassette, subfamily C, CydC.
       0.608
SEK30410.1
Cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein.
       0.600
SEK30287.1
ATP-binding cassette, subfamily C, CydD.
       0.594
SEK30345.1
Cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein.
       0.585
SEK30892.1
L-asparaginase.
       0.585
Your Current Organism:
Halomonas daqiaonensis
NCBI taxonomy Id: 650850
Other names: CGMCC 1.9150, H. daqiaonensis, Halomonas daqiaonensis Qu et al. 2011, Halomonas sp. YCSA28, Halomonas sp. YCSA39, MCCC 1B00920, NCCB 100305, strain YCSA28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.