STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK19925.1Hypothetical protein. (325 aa)    
Predicted Functional Partners:
SEK19957.1
Osmoprotectant transport system substrate-binding protein.
       0.764
SEK19996.1
Osmoprotectant transport system permease protein.
       0.763
SEK20032.1
Osmoprotectant transport system ATP-binding protein.
       0.763
SEK20087.1
Osmoprotectant transport system permease protein.
       0.609
SEK31261.1
Hypothetical protein.
  
     0.598
SEL05769.1
Putative membrane protein.
  
     0.487
SEL97510.1
Hypothetical protein.
 
     0.472
SEK20118.1
2-oxoisovalerate dehydrogenase E1 component alpha subunit.
  
    0.468
SEK20162.1
2-oxoisovalerate dehydrogenase E1 component beta subunit.
       0.467
SEK20198.1
2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase).
       0.415
Your Current Organism:
Halomonas daqiaonensis
NCBI taxonomy Id: 650850
Other names: CGMCC 1.9150, H. daqiaonensis, Halomonas daqiaonensis Qu et al. 2011, Halomonas sp. YCSA28, Halomonas sp. YCSA39, MCCC 1B00920, NCCB 100305, strain YCSA28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.