STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptELPS-assembly lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family. (163 aa)    
Predicted Functional Partners:
lptD
LPS-assembly protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
 
 
 0.990
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.950
SEK48352.1
DNA polymerase III, delta subunit.
 
    0.919
SEK48177.1
Zinc-ribbon containing domain-containing protein.
 
     0.815
SEK59963.1
Lipopolysaccharide export system protein LptC.
  
  
 0.782
SEL15050.1
Beta-barrel assembly machine subunit BamC.
  
  
 0.751
SEK65020.1
SEC-C motif-containing protein.
  
     0.732
SEL37839.1
Hypothetical protein.
  
     0.731
SEK48422.1
Hypothetical protein.
       0.709
SEK61960.1
Hypothetical protein.
  
     0.709
Your Current Organism:
Halomonas daqiaonensis
NCBI taxonomy Id: 650850
Other names: CGMCC 1.9150, H. daqiaonensis, Halomonas daqiaonensis Qu et al. 2011, Halomonas sp. YCSA28, Halomonas sp. YCSA39, MCCC 1B00920, NCCB 100305, strain YCSA28
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