STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK50473.1Polysaccharide export outer membrane protein. (372 aa)    
Predicted Functional Partners:
SEK50393.1
Tyrosine-protein kinase Etk/Wzc.
 
 0.999
SEK40168.1
Tyrosine-protein kinase Etk/Wzc.
 
 0.998
SEM13958.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.957
SEK48844.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.895
SEK50425.1
Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.809
SEK50529.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
 
 0.769
SEK40212.1
Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.707
SEL82976.1
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.667
SEK40117.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.625
SEK48525.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.620
Your Current Organism:
Halomonas daqiaonensis
NCBI taxonomy Id: 650850
Other names: CGMCC 1.9150, H. daqiaonensis, Halomonas daqiaonensis Qu et al. 2011, Halomonas sp. YCSA28, Halomonas sp. YCSA39, MCCC 1B00920, NCCB 100305, strain YCSA28
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