STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK75954.1Heme d1 biosynthesis radical SAM protein NirJ. (400 aa)    
Predicted Functional Partners:
SEK75873.1
Transcriptional regulator, AsnC family.
 
 0.991
SEK76046.1
Cytochrome c, mono-and diheme variants.
 
  
 0.989
SEK75913.1
Transcriptional regulator, AsnC family.
 
 
 0.989
SEK75793.1
Transcriptional regulator, AsnC family.
 
 0.985
SEK75830.1
Transcriptional regulator, AsnC family.
 
 
 0.985
SEK75728.1
Cytochrome c55X.
 
  
 0.925
SEK75678.1
Protein NirF.
 
  
 0.920
SEK74187.1
Nitrite reductase (NO-forming) / hydroxylamine reductase.
 
  
 0.873
SEK75995.1
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
 
  
 0.858
SEK74642.1
NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator.
 
  
 0.802
Your Current Organism:
Halomonas daqiaonensis
NCBI taxonomy Id: 650850
Other names: CGMCC 1.9150, H. daqiaonensis, Halomonas daqiaonensis Qu et al. 2011, Halomonas sp. YCSA28, Halomonas sp. YCSA39, MCCC 1B00920, NCCB 100305, strain YCSA28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.