STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL52716.1Diguanylate cyclase (GGDEF) domain-containing protein. (357 aa)    
Predicted Functional Partners:
SEL52031.1
PAS domain S-box-containing protein.
 0.998
SEK64633.1
Two-component system, NarL family, sensor histidine kinase BarA.
 
 0.995
SEL00956.1
TMAO reductase sytem sensor TorS.
 
 0.995
SEL03673.1
PAS domain S-box-containing protein.
 0.984
SEL51794.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 0.970
SEL52667.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
0.957
SEK94129.1
HAMP domain-containing protein.
 0.947
SEL15839.1
PAS domain S-box-containing protein.
  
 0.944
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.934
SEM17540.1
PAS domain S-box-containing protein.
 0.922
Your Current Organism:
Halomonas daqiaonensis
NCBI taxonomy Id: 650850
Other names: CGMCC 1.9150, H. daqiaonensis, Halomonas daqiaonensis Qu et al. 2011, Halomonas sp. YCSA28, Halomonas sp. YCSA39, MCCC 1B00920, NCCB 100305, strain YCSA28
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