STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR48077.1Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. (220 aa)    
Predicted Functional Partners:
SFR48085.1
General secretion pathway protein E.
       0.727
SFR62818.1
Phage integrase, N-terminal SAM-like domain.
  
    0.633
SFR45303.1
Protein of unknown function.
   
    0.581
SFR63553.1
Integron integrase; Belongs to the 'phage' integrase family.
   
    0.581
xerD
Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.581
SFR48067.1
Diguanylate cyclase with PAS/PAC and GAF sensors.
  
    0.539
SFR48093.1
DNA-binding transcriptional regulator, PucR family.
       0.520
SFR48109.1
Non-heme chloroperoxidase.
 
     0.464
Your Current Organism:
Marinobacter daqiaonensis
NCBI taxonomy Id: 650891
Other names: CGMCC 1.9167, LMG 25365, LMG:25365, M. daqiaonensis, Marinobacter daqiaonensis Qu et al. 2011, Marinobacter sp. YCSA40, NCCB 100308, strain YCSA40
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