Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR48619.1 | SFR52647.1 | SAMN05216203_0782 | SAMN05216203_1146 | Hypothetical protein. | L-lysine 2,3-aminomutase. | 0.455 |
SFR48619.1 | SFR53606.1 | SAMN05216203_0782 | SAMN05216203_1226 | Hypothetical protein. | Elongation factor P. | 0.418 |
SFR48619.1 | SFR64534.1 | SAMN05216203_0782 | SAMN05216203_2117 | Hypothetical protein. | Hypothetical protein. | 0.453 |
SFR48619.1 | SFR76707.1 | SAMN05216203_0782 | SAMN05216203_2893 | Hypothetical protein. | Hypothetical protein. | 0.456 |
SFR48619.1 | dsbD | SAMN05216203_0782 | SAMN05216203_0783 | Hypothetical protein. | Thiol:disulfide interchange protein DsbD; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | 0.555 |
SFR48619.1 | pdxB | SAMN05216203_0782 | SAMN05216203_0780 | Hypothetical protein. | 4-phosphoerythronate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | 0.687 |
SFR48619.1 | rhlB | SAMN05216203_0782 | SAMN05216203_0781 | Hypothetical protein. | ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. | 0.789 |
SFR52647.1 | SFR48619.1 | SAMN05216203_1146 | SAMN05216203_0782 | L-lysine 2,3-aminomutase. | Hypothetical protein. | 0.455 |
SFR53606.1 | SFR48619.1 | SAMN05216203_1226 | SAMN05216203_0782 | Elongation factor P. | Hypothetical protein. | 0.418 |
SFR64534.1 | SFR48619.1 | SAMN05216203_2117 | SAMN05216203_0782 | Hypothetical protein. | Hypothetical protein. | 0.453 |
SFR76707.1 | SFR48619.1 | SAMN05216203_2893 | SAMN05216203_0782 | Hypothetical protein. | Hypothetical protein. | 0.456 |
dsbD | SFR48619.1 | SAMN05216203_0783 | SAMN05216203_0782 | Thiol:disulfide interchange protein DsbD; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | Hypothetical protein. | 0.555 |
dsbD | pdxB | SAMN05216203_0783 | SAMN05216203_0780 | Thiol:disulfide interchange protein DsbD; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | 4-phosphoerythronate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | 0.411 |
dsbD | rhlB | SAMN05216203_0783 | SAMN05216203_0781 | Thiol:disulfide interchange protein DsbD; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. | 0.547 |
pdxB | SFR48619.1 | SAMN05216203_0780 | SAMN05216203_0782 | 4-phosphoerythronate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | Hypothetical protein. | 0.687 |
pdxB | dsbD | SAMN05216203_0780 | SAMN05216203_0783 | 4-phosphoerythronate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | Thiol:disulfide interchange protein DsbD; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | 0.411 |
pdxB | rhlB | SAMN05216203_0780 | SAMN05216203_0781 | 4-phosphoerythronate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. | 0.570 |
rhlB | SFR48619.1 | SAMN05216203_0781 | SAMN05216203_0782 | ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. | Hypothetical protein. | 0.789 |
rhlB | dsbD | SAMN05216203_0781 | SAMN05216203_0783 | ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. | Thiol:disulfide interchange protein DsbD; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | 0.547 |
rhlB | pdxB | SAMN05216203_0781 | SAMN05216203_0780 | ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. | 4-phosphoerythronate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | 0.570 |