Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR49146.1 | SFR76781.1 | SAMN05216203_0848 | SAMN05216203_2899 | Uncharacterized protein. | Bacterial translation initiation factor 3 (bIF-3); Belongs to the IF-3 family. | 0.879 |
SFR49146.1 | rimM | SAMN05216203_0848 | SAMN05216203_2736 | Uncharacterized protein. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.886 |
SFR49146.1 | rplA | SAMN05216203_0848 | SAMN05216203_3582 | Uncharacterized protein. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.882 |
SFR49146.1 | rplC | SAMN05216203_0848 | SAMN05216203_3414 | Uncharacterized protein. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.882 |
SFR49146.1 | rplK | SAMN05216203_0848 | SAMN05216203_3581 | Uncharacterized protein. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.890 |
SFR49146.1 | rpmF | SAMN05216203_0848 | SAMN05216203_0847 | Uncharacterized protein. | Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.970 |
SFR49146.1 | rpsB | SAMN05216203_0848 | SAMN05216203_0992 | Uncharacterized protein. | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.879 |
SFR49146.1 | rpsC | SAMN05216203_0848 | SAMN05216203_3420 | Uncharacterized protein. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.986 |
SFR49146.1 | rpsF | SAMN05216203_0848 | SAMN05216203_2660 | Uncharacterized protein. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.881 |
SFR49146.1 | rpsP | SAMN05216203_0848 | SAMN05216203_2735 | Uncharacterized protein. | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.880 |
SFR76781.1 | SFR49146.1 | SAMN05216203_2899 | SAMN05216203_0848 | Bacterial translation initiation factor 3 (bIF-3); Belongs to the IF-3 family. | Uncharacterized protein. | 0.879 |
SFR76781.1 | rimM | SAMN05216203_2899 | SAMN05216203_2736 | Bacterial translation initiation factor 3 (bIF-3); Belongs to the IF-3 family. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.569 |
SFR76781.1 | rplA | SAMN05216203_2899 | SAMN05216203_3582 | Bacterial translation initiation factor 3 (bIF-3); Belongs to the IF-3 family. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.945 |
SFR76781.1 | rplC | SAMN05216203_2899 | SAMN05216203_3414 | Bacterial translation initiation factor 3 (bIF-3); Belongs to the IF-3 family. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.931 |
SFR76781.1 | rplK | SAMN05216203_2899 | SAMN05216203_3581 | Bacterial translation initiation factor 3 (bIF-3); Belongs to the IF-3 family. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.931 |
SFR76781.1 | rpmF | SAMN05216203_2899 | SAMN05216203_0847 | Bacterial translation initiation factor 3 (bIF-3); Belongs to the IF-3 family. | Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.909 |
SFR76781.1 | rpsB | SAMN05216203_2899 | SAMN05216203_0992 | Bacterial translation initiation factor 3 (bIF-3); Belongs to the IF-3 family. | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.992 |
SFR76781.1 | rpsC | SAMN05216203_2899 | SAMN05216203_3420 | Bacterial translation initiation factor 3 (bIF-3); Belongs to the IF-3 family. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.992 |
SFR76781.1 | rpsF | SAMN05216203_2899 | SAMN05216203_2660 | Bacterial translation initiation factor 3 (bIF-3); Belongs to the IF-3 family. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.990 |
SFR76781.1 | rpsP | SAMN05216203_2899 | SAMN05216203_2735 | Bacterial translation initiation factor 3 (bIF-3); Belongs to the IF-3 family. | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.985 |
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