Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR44801.1 | SFR49285.1 | SAMN05216203_0405 | SAMN05216203_0862 | Pyruvate dehydrogenase E1 component beta subunit. | Hypothetical protein. | 0.469 |
SFR44801.1 | SFR50439.1 | SAMN05216203_0405 | SAMN05216203_0967 | Pyruvate dehydrogenase E1 component beta subunit. | Ribose-phosphate pyrophosphokinase. | 0.971 |
SFR48718.1 | SFR49285.1 | SAMN05216203_0798 | SAMN05216203_0862 | DNA-J related protein. | Hypothetical protein. | 0.664 |
SFR48718.1 | SFR50439.1 | SAMN05216203_0798 | SAMN05216203_0967 | DNA-J related protein. | Ribose-phosphate pyrophosphokinase. | 0.433 |
SFR48718.1 | atpD | SAMN05216203_0798 | SAMN05216203_2183 | DNA-J related protein. | ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.595 |
SFR48718.1 | atpE | SAMN05216203_0798 | SAMN05216203_2188 | DNA-J related protein. | ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.569 |
SFR48718.1 | groL | SAMN05216203_0798 | SAMN05216203_2956 | DNA-J related protein. | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.914 |
SFR48718.1 | polA | SAMN05216203_0798 | SAMN05216203_3347 | DNA-J related protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.512 |
SFR49285.1 | SFR44801.1 | SAMN05216203_0862 | SAMN05216203_0405 | Hypothetical protein. | Pyruvate dehydrogenase E1 component beta subunit. | 0.469 |
SFR49285.1 | SFR48718.1 | SAMN05216203_0862 | SAMN05216203_0798 | Hypothetical protein. | DNA-J related protein. | 0.664 |
SFR49285.1 | SFR49294.1 | SAMN05216203_0862 | SAMN05216203_0863 | Hypothetical protein. | Hypothetical protein. | 0.488 |
SFR49285.1 | SFR50439.1 | SAMN05216203_0862 | SAMN05216203_0967 | Hypothetical protein. | Ribose-phosphate pyrophosphokinase. | 0.440 |
SFR49285.1 | SFR53835.1 | SAMN05216203_0862 | SAMN05216203_1242 | Hypothetical protein. | Pyruvate dehydrogenase E1 component beta subunit. | 0.469 |
SFR49285.1 | SFR61339.1 | SAMN05216203_0862 | SAMN05216203_1786 | Hypothetical protein. | 2-oxoisovalerate dehydrogenase E1 component beta subunit. | 0.469 |
SFR49285.1 | atpD | SAMN05216203_0862 | SAMN05216203_2183 | Hypothetical protein. | ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.792 |
SFR49285.1 | atpE | SAMN05216203_0862 | SAMN05216203_2188 | Hypothetical protein. | ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.744 |
SFR49285.1 | groL | SAMN05216203_0862 | SAMN05216203_2956 | Hypothetical protein. | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.749 |
SFR49285.1 | polA | SAMN05216203_0862 | SAMN05216203_3347 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.564 |
SFR49294.1 | SFR49285.1 | SAMN05216203_0863 | SAMN05216203_0862 | Hypothetical protein. | Hypothetical protein. | 0.488 |
SFR50439.1 | SFR44801.1 | SAMN05216203_0967 | SAMN05216203_0405 | Ribose-phosphate pyrophosphokinase. | Pyruvate dehydrogenase E1 component beta subunit. | 0.971 |
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