STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR61795.1fatty-acyl-CoA synthase. (544 aa)    
Predicted Functional Partners:
SFR53672.1
Acyl carrier protein.
0.861
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.799
SFR62078.1
Cytochrome P450 / NADPH-cytochrome P450 reductase.
  
 0.792
SFR52285.1
Hypothetical protein.
  
 
  0.730
SFR52299.1
Hypothetical protein.
  
 
  0.729
SFR51307.1
Capsule assembly protein Wzi.
    
  0.676
SFR63588.1
Hypothetical protein; Manually curated.
    
  0.676
SFR73773.1
Undecaprenyl-diphosphatase.
    
  0.676
SFR74682.1
Undecaprenyl-diphosphatase.
    
  0.676
SFR62417.1
butyryl-CoA dehydrogenase.
  
 
  0.621
Your Current Organism:
Marinobacter daqiaonensis
NCBI taxonomy Id: 650891
Other names: CGMCC 1.9167, LMG 25365, LMG:25365, M. daqiaonensis, Marinobacter daqiaonensis Qu et al. 2011, Marinobacter sp. YCSA40, NCCB 100308, strain YCSA40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.