Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR41098.1 | SFR54585.1 | SAMN05216203_0047 | SAMN05216203_1292 | Hypothetical protein. | SWIM/SEC-C metal-binding motif-containing protein, PBPRA1643 family. | 0.504 |
SFR41098.1 | SFR64523.1 | SAMN05216203_0047 | SAMN05216203_2116 | Hypothetical protein. | Choline-glycine betaine transporter. | 0.522 |
SFR41098.1 | SFR77662.1 | SAMN05216203_0047 | SAMN05216203_2966 | Hypothetical protein. | Hypothetical protein. | 0.597 |
SFR47456.1 | SFR64523.1 | SAMN05216203_0623 | SAMN05216203_2116 | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | Choline-glycine betaine transporter. | 0.448 |
SFR47456.1 | betI | SAMN05216203_0623 | SAMN05216203_2113 | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. | 0.813 |
SFR50350.1 | SFR64523.1 | SAMN05216203_0960 | SAMN05216203_2116 | Hypothetical protein. | Choline-glycine betaine transporter. | 0.496 |
SFR50350.1 | SFR77662.1 | SAMN05216203_0960 | SAMN05216203_2966 | Hypothetical protein. | Hypothetical protein. | 0.400 |
SFR54585.1 | SFR41098.1 | SAMN05216203_1292 | SAMN05216203_0047 | SWIM/SEC-C metal-binding motif-containing protein, PBPRA1643 family. | Hypothetical protein. | 0.504 |
SFR54585.1 | SFR64523.1 | SAMN05216203_1292 | SAMN05216203_2116 | SWIM/SEC-C metal-binding motif-containing protein, PBPRA1643 family. | Choline-glycine betaine transporter. | 0.553 |
SFR54585.1 | SFR65996.1 | SAMN05216203_1292 | SAMN05216203_2297 | SWIM/SEC-C metal-binding motif-containing protein, PBPRA1643 family. | Protein of unknown function. | 0.450 |
SFR64523.1 | SFR41098.1 | SAMN05216203_2116 | SAMN05216203_0047 | Choline-glycine betaine transporter. | Hypothetical protein. | 0.522 |
SFR64523.1 | SFR47456.1 | SAMN05216203_2116 | SAMN05216203_0623 | Choline-glycine betaine transporter. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.448 |
SFR64523.1 | SFR50350.1 | SAMN05216203_2116 | SAMN05216203_0960 | Choline-glycine betaine transporter. | Hypothetical protein. | 0.496 |
SFR64523.1 | SFR54585.1 | SAMN05216203_2116 | SAMN05216203_1292 | Choline-glycine betaine transporter. | SWIM/SEC-C metal-binding motif-containing protein, PBPRA1643 family. | 0.553 |
SFR64523.1 | SFR65996.1 | SAMN05216203_2116 | SAMN05216203_2297 | Choline-glycine betaine transporter. | Protein of unknown function. | 0.408 |
SFR64523.1 | SFR77662.1 | SAMN05216203_2116 | SAMN05216203_2966 | Choline-glycine betaine transporter. | Hypothetical protein. | 0.422 |
SFR64523.1 | betA | SAMN05216203_2116 | SAMN05216203_2115 | Choline-glycine betaine transporter. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.730 |
SFR64523.1 | betI | SAMN05216203_2116 | SAMN05216203_2113 | Choline-glycine betaine transporter. | Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. | 0.705 |
SFR64523.1 | tpx | SAMN05216203_2116 | SAMN05216203_1994 | Choline-glycine betaine transporter. | Thiol peroxidase (atypical 2-Cys peroxiredoxin); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily. | 0.431 |
SFR65996.1 | SFR54585.1 | SAMN05216203_2297 | SAMN05216203_1292 | Protein of unknown function. | SWIM/SEC-C metal-binding motif-containing protein, PBPRA1643 family. | 0.450 |
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