Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFR75878.1 | rplM | SAMN05216203_2826 | SAMN05216203_2584 | Ribosome-associated protein. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.978 |
| SFR75878.1 | rplQ | SAMN05216203_2826 | SAMN05216203_3440 | Ribosome-associated protein. | LSU ribosomal protein L17P. | 0.972 |
| SFR75878.1 | rplT | SAMN05216203_2826 | SAMN05216203_2902 | Ribosome-associated protein. | Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.972 |
| SFR75878.1 | rplU | SAMN05216203_2826 | SAMN05216203_3545 | Ribosome-associated protein. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.990 |
| SFR75878.1 | rpmA | SAMN05216203_2826 | SAMN05216203_3546 | Ribosome-associated protein. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.984 |
| SFR75878.1 | rpmJ | SAMN05216203_2826 | SAMN05216203_3435 | Ribosome-associated protein. | LSU ribosomal protein L36P; Manually curated; Belongs to the bacterial ribosomal protein bL36 family. | 0.979 |
| SFR75878.1 | rpsG | SAMN05216203_2826 | SAMN05216203_3588 | Ribosome-associated protein. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.981 |
| SFR75878.1 | rpsL | SAMN05216203_2826 | SAMN05216203_3587 | Ribosome-associated protein. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.981 |
| SFR75878.1 | rpsN | SAMN05216203_2826 | SAMN05216203_3427 | Ribosome-associated protein. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.972 |
| SFR75878.1 | rpsP | SAMN05216203_2826 | SAMN05216203_2735 | Ribosome-associated protein. | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.984 |
| rplM | SFR75878.1 | SAMN05216203_2584 | SAMN05216203_2826 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosome-associated protein. | 0.978 |
| rplM | rplQ | SAMN05216203_2584 | SAMN05216203_3440 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L17P. | 0.998 |
| rplM | rplT | SAMN05216203_2584 | SAMN05216203_2902 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
| rplM | rplU | SAMN05216203_2584 | SAMN05216203_3545 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.998 |
| rplM | rpmA | SAMN05216203_2584 | SAMN05216203_3546 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
| rplM | rpmJ | SAMN05216203_2584 | SAMN05216203_3435 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L36P; Manually curated; Belongs to the bacterial ribosomal protein bL36 family. | 0.997 |
| rplM | rpsG | SAMN05216203_2584 | SAMN05216203_3588 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.998 |
| rplM | rpsL | SAMN05216203_2584 | SAMN05216203_3587 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.998 |
| rplM | rpsN | SAMN05216203_2584 | SAMN05216203_3427 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.998 |
| rplM | rpsP | SAMN05216203_2584 | SAMN05216203_2735 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.998 |
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