STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR80860.1Hypothetical protein. (492 aa)    
Predicted Functional Partners:
SFR48405.1
Competence protein ComEC.
  
  
 0.787
SFR82605.1
Hypothetical protein.
  
     0.762
SFR81786.1
DNA replication and repair protein RadC; Belongs to the UPF0758 family.
  
    0.760
SFR77341.1
Tetratricopeptide repeat-containing protein.
 
     0.757
SFR48564.1
Hypothetical protein.
  
     0.755
SFR65808.1
Hypothetical protein.
  
     0.748
SFR44984.1
Predicted 5' DNA nuclease, flap endonuclease-1-like, helix-3-turn-helix (H3TH) domain.
  
     0.743
SFR76661.1
Hypothetical protein.
 
     0.743
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
   
  
 0.739
SFR80832.1
Membrane associated serine protease, rhomboid family.
 
     0.735
Your Current Organism:
Marinobacter daqiaonensis
NCBI taxonomy Id: 650891
Other names: CGMCC 1.9167, LMG 25365, LMG:25365, M. daqiaonensis, Marinobacter daqiaonensis Qu et al. 2011, Marinobacter sp. YCSA40, NCCB 100308, strain YCSA40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.