STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ42621.1KEGG: cyc:PCC7424_3328 hypothetical protein; SPTR: Putative uncharacterized protein. (146 aa)    
Predicted Functional Partners:
AFZ43822.1
PFAM: Protein of unknown function (DUF3531); KEGG: syp:SYNPCC7002_A0499 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.766
AFZ45819.1
PFAM: Mo-dependent nitrogenase C-terminus; COGs: COG3793 Tellurite resistance protein; InterPro IPR009717; KEGG: cyh:Cyan8802_4454 Mo-dependent nitrogenase family protein; PFAM: Mo-dependent nitrogenase family protein; SPTR: Mo-dependent nitrogenase C-terminal domain family protein.
  
     0.763
AFZ43491.1
KEGG: cyc:PCC7424_0261 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.752
AFZ45215.1
PFAM: Protein of unknown function (DUF2854); KEGG: cyc:PCC7424_3063 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.746
AFZ43043.1
KEGG: cyc:PCC7424_1178 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.738
AFZ45423.1
KEGG: mar:MAE_25210 hypothetical protein; SPTR: Similar to tr|Q8YWB5|Q8YWB5.
  
     0.726
pcyA
Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family.
  
     0.707
secE
Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.699
AFZ44326.1
KEGG: syp:SYNPCC7002_A0555 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.692
AFZ45669.1
PFAM: Single-strand binding protein family; COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344:IPR000424; KEGG: mar:MAE_37950 single-stranded DNA-binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: Single-strand binding protein family; TIGRFAM: single-strand binding protein.
  
     0.686
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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