STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ42691.1Protein of unknown function DUF891; PFAM: Phage derived protein Gp49-like (DUF891); COGs: COG4679 Phage-related protein; InterPro IPR009241; KEGG: cja:CJA_1213 hypothetical protein; PFAM: protein of unknown function DUF891; SPTR: Putative uncharacterized protein. (114 aa)    
Predicted Functional Partners:
AFZ42692.1
KEGG: sus:Acid_4182 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.840
AFZ42999.1
PFAM: Helix-turn-helix; InterPro IPR001387; KEGG: rru:Rru_A3411 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Helix-turn-helix motif.
  
 
 0.587
AFZ43381.1
Helix-turn-helix domain protein; PFAM: Helix-turn-helix; InterPro IPR001387; KEGG: npu:Npun_F5346 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative transcriptional regulator, XRE family.
  
 
 0.587
AFZ43779.1
PFAM: CBS domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0642 Signal transduction histidine kinase; InterProIPR000644:IPR000014:IPR003661:IPR003594:IPR 001789:IPR005467:IPR000700:IPR013767:IPR004358; KEGG: ana:all4097 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CBS domain containing protein; PAS fold domain protein; response regulator receiver; SMART: ATP-binding regio [...]
  
 
 0.587
AFZ45092.1
PFAM: Uncharacterised protein family (UPF0150); InterPro IPR005357; KEGG: cyc:PCC7424_0847 protein of unknown function UPF0150; PFAM: Uncharacterised protein family UPF0150; SPTR: Putative uncharacterized protein.
  
     0.522
AFZ42690.1
RNP-1 like RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro IPR000504; KEGG: cyc:PCC7424_1013 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; SPTR: RNP-1 like RNA-binding protein.
       0.449
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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