STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ42715.1KEGG: mar:MAE_37550 hypothetical protein; SPTR: Putative uncharacterized protein. (47 aa)    
Predicted Functional Partners:
AFZ42714.1
PFAM: Gas vesicle protein K; Gas vesicle protein; InterPro IPR007805:IPR000638; KEGG: npu:Npun_F2155 gas vesicle protein GvpK; PFAM: Gas vesicle K; gas vesicle protein GVPa; SPTR: Gas vesicle protein GvpK.
       0.774
AFZ42713.1
PFAM: Gas vesicle synthesis protein GvpL/GvpF; InterPro IPR009430; KEGG: ava:Ava_0073 gas vesicle synthesis GvpLGvpF; PFAM: Gas vesicle synthesis GvpLGvpF; SPTR: Gas vesicle synthesis GvpLGvpF.
       0.773
AFZ42716.1
KEGG: ehi:EHI_173490 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.768
AFZ42717.1
Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
       0.768
AFZ42718.1
Gas vesicle protein GvpN; PFAM: AAA domain (dynein-related subfamily); TIGRFAM: gas vesicle protein GvpN; COGs: COG0714 MoxR-like ATPase; InterPro IPR013462:IPR011704:IPR003593; KEGG: npu:Npun_F2153 gas vesicle protein GvpN; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; SPTR: Gas vesicle protein GvpN; TIGRFAM: gas vesicle protein GvpN.
       0.647
AFZ42712.1
PFAM: Gas vesicle protein G; KEGG: ana:all2247 gas vesicle protein; SPTR: Gas vesicle G.
       0.458
AFZ42719.1
Gas vesicle protein GvpC; InterPro IPR002003; KEGG: mar:MAE_37620 gas vesicle structural protein; SPTR: Gas vesicle protein GVPc; TIGRFAM: gas vesicle protein GvpC.
       0.450
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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