STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ42968.1PFAM: Protein of unknown function (DUF3464); KEGG: cyh:Cyan8802_2334 hypothetical protein; SPTR: Putative uncharacterized protein. (158 aa)    
Predicted Functional Partners:
AFZ44771.1
Ycf48-like protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.
  
   
 0.801
psb28
PFAM: Psb28 protein; TIGRFAM: photosystem II reaction center protein Psb28; InterPro IPR005610; KEGG: cyt:cce_1599 photosystem II reaction center protein Psb28; PFAM: photosystem II protein PsbW class I; SPTR: Photosystem II reaction center Psb28 protein; TIGRFAM: photosystem II reaction center protein Psb28; Belongs to the Psb28 family.
  
     0.771
AFZ43109.1
KEGG: syn:slr1470 hypothetical protein; SPTR: Slr1470 protein.
  
     0.769
AFZ43288.1
PFAM: Protein of unknown function (DUF1092); InterPro IPR009472; KEGG: cyc:PCC7424_0060 protein of unknown function DUF1092; PFAM: protein of unknown function DUF1092; SPTR: Putative uncharacterized protein.
  
     0.769
AFZ44849.1
PFAM: Manganese-stabilising protein / photosystem II polypeptide; InterPro IPR002628; KEGG: npu:Npun_F4810 photosystem II manganese-stabilizing protein PsbO; PFAM: photosystem II manganese-stabilizing protein PsbO; SPTR: Photosystem II manganese-stabilizing protein PsbO.
  
     0.768
AFZ45668.1
PFAM: Protein of unknown function (DUF1350); InterPro IPR010765; KEGG: cyc:PCC7424_4501 protein of unknown function DUF1350; PFAM: protein of unknown function DUF1350; SPTR: Putative uncharacterized protein.
  
     0.763
AFZ45904.1
PFAM: Protein of unknown function (DUF3529); KEGG: cyp:PCC8801_3055 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.763
psaE
Photosystem I reaction centre subunit IV/PsaE; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family.
  
     0.761
AFZ42769.1
PFAM: Domain of unknown function (DUF1995); InterPro IPR018962; KEGG: cyh:Cyan8802_3366 hypothetical protein; PFAM: Domain of unknown function DUF1995; SPTR: Putative uncharacterized protein.
  
     0.759
rpsO
SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
       0.759
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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