STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ42994.1KEGG: cyc:PCC7424_3215 protein of unknown function UPF0150; SPTR: Putative uncharacterized protein. (53 aa)    
Predicted Functional Partners:
AFZ42993.1
beta-Ig-H3/fasciclin; PFAM: Fasciclin domain; COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: ava:Ava_2980 beta-Ig-H3/fasciclin; PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; SPTR: Beta-Ig-H3/fasciclin.
       0.480
AFZ42995.1
DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase; Restriction endonuclease; COGs: COG0863 DNA modification methylase; InterPro IPR001091:IPR002941:IPR007560; KEGG: cyc:PCC7424_4304 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6 domain protein; restriction endonuclease; SPTR: DNA methylase N-4/N-6.
       0.472
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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