STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ43063.1PFAM: Mechanosensitive ion channel; COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: cyt:cce_1819 hypothetical protein; PFAM: MscS Mechanosensitive ion channel; SPTR: Putative uncharacterized protein. (371 aa)    
Predicted Functional Partners:
AFZ43062.1
PFAM: Mechanosensitive ion channel; COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: cyt:cce_1820 small mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: Putative small mechanosensitive ion channel, MscS family.
 
    
0.792
AFZ43829.1
PFAM: Mechanosensitive ion channel; COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: syp:SYNPCC7002_A2574 small-conductance mechanosensitive channel; PFAM: MscS Mechanosensitive ion channel; SPTR: Small-conductance mechanosensitive channel.
  
     0.630
mnmE
tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.499
AFZ43830.1
KEGG: syp:SYNPCC7002_A2572 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.458
AFZ43980.1
PFAM: Pentapeptide repeats (8 copies); COGs: COG3972 Superfamily I DNA and RNA helicase; InterPro IPR001646; KEGG: cyc:PCC7424_4786 pentapeptide repeat protein; PFAM: pentapeptide repeat protein; SPTR: Pentapeptide repeat protein.
  
     0.438
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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