STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapCPilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (134 aa)    
Predicted Functional Partners:
AFZ43292.1
KEGG: rrs:RoseRS_3906 SpoVT/AbrB domain-containing protein; SPTR: SpoVT/AbrB domain protein.
 
 
 0.983
AFZ43290.1
COGs: COG4240 kinase; KEGG: cyt:cce_2521 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.588
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.531
AFZ45745.1
PilT protein domain protein; PFAM: PIN domain; COGs: COG5611 nucleic-acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: neu:NE1349 hypothetical protein; PFAM: PilT protein domain protein; SPTR: Putative uncharacterized protein.
  
     0.421
AFZ44350.1
Transcriptional regulator, XRE family; COGs: COG5499 transcription regulator containing HTH domain; InterPro IPR001387; KEGG: syp:SYNPCC7002_D0015 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: HTH transcriptional regulator.
  
     0.404
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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