STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ43307.1SMC domain protein; TIGRFAM: DNA sulfur modification protein DndD; COGs: COG0419 ATPase involved in DNA repair; InterPro IPR003395; KEGG: ter:Tery_2151 hypothetical protein; PFAM: SMC domain protein; SPTR: Putative uncharacterized protein. (687 aa)    
Predicted Functional Partners:
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
 0.918
AFZ43988.1
Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: TIGR04168 family protein; InterPro IPR004843; KEGG: cyt:cce_0087 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: Metallophosphoesterase.
  
 0.918
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.913
AFZ43308.1
KEGG: cyc:PCC7424_0210 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.800
AFZ44095.1
DNA sulfur modification protein DndE; PFAM: Domain of unknown function (DUF1832); TIGRFAM: DNA sulfur modification protein DndE; InterPro IPR014969; KEGG: mar:MAE_36770 hypothetical protein; PFAM: Domain of unknown function DUF1832; SPTR: Putative uncharacterized protein; TIGRFAM: DNA sulfur modification protein DndE.
 
   
 0.795
AFZ42589.1
TIGRFAM: dnd system-associated protein 4; KEGG: cyc:PCC7424_0483 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.789
AFZ43518.1
PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: DNA phosphorothioation system restriction enzyme; COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR014021:IPR001650:IPR014001:IPR006935; KEGG: cyc:PCC7424_2593 type III restriction protein res subunit; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; SPTR: Type III restriction protein res subunit.
 
    0.789
AFZ45148.1
Sulfurtransferase DndC; PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: putative sulfurtransferase DndC; COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR017598; KEGG: cyc:PCC7424_4840 hypothetical protein; SPTR: Sulfurtransferase DndC; TIGRFAM: sulfurtransferase DndC.
 
   
 0.782
AFZ44010.1
Hypothetical protein; TIGRFAM: DNA phosphorothioation-associated putative methyltransferase; KEGG: ava:Ava_B0313 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.754
AFZ44112.1
KEGG: ana:alr3445 hypothetical protein; SPTR: Alr3445 protein.
  
     0.694
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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