STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ43384.1PFAM: Uncharacterized conserved protein (DUF2081); Protein of unknown function DUF262; COGs: COG3472 conserved hypothetical protein; InterPro IPR004919:IPR018651; KEGG: ana:all3615 hypothetical protein; PFAM: Protein of unknown function DUF2081; protein of unknown function DUF262; SPTR: Putative uncharacterized protein. (588 aa)    
Predicted Functional Partners:
AFZ43382.1
KEGG: ava:Ava_3263 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.517
AFZ43383.1
KEGG: npu:Npun_R5345 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.517
AFZ43381.1
Helix-turn-helix domain protein; PFAM: Helix-turn-helix; InterPro IPR001387; KEGG: npu:Npun_F5346 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative transcriptional regulator, XRE family.
       0.472
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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