STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ43842.1PFAM: Ribbon-helix-helix protein, copG family; Reverse transcriptase (RNA-dependent DNA polymerase); InterPro IPR000477; KEGG: dau:Daud_0395 hypothetical protein; SPTR: Putative uncharacterized protein. (1158 aa)    
Predicted Functional Partners:
AFZ43843.1
DNA polymerase III, epsilon subunit; PFAM: Exonuclease; UvrD/REP helicase; Viral (Superfamily 1) RNA helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterProIPR006055:IPR014016:IPR014017:IPR000212:IPR 013520:IPR006054; KEGG: cyn:Cyan7425_2302 UvrD/REP helicase; PFAM: UvrD/REP helicase; Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: UvrD/REP helicase; TIGRFAM: DNA polymerase III, epsilon subunit.
 
  
 0.931
AFZ42699.1
PFAM: CheW-like domain; COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: ana:all1070 purine-binding chemotaxis protein; PFAM: CheW domain protein; SMART: CheW domain protein; SPTR: Putative uncharacterized protein.
  
     0.623
AFZ43790.1
KEGG: azo:azo1677 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.586
AFZ43841.1
KEGG: ptm:GSPATT00015143001 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.493
AFZ44072.1
TIGRFAM: CRISPR-associated protein Csx17, subtype Dpsyc; KEGG: tgr:Tgr7_2441 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.489
AFZ44253.1
KEGG: cyp:PCC8801_2229 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.487
AFZ43001.1
KEGG: mar:MAE_33310 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.475
AFZ43534.1
Protein of unknown function DUF324; PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr6; COGs: COG1604 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537; KEGG: syp:SYNPCC7002_F0044 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: Putative uncharacterized protein.
 
     0.449
AFZ44073.1
PFAM: CRISPR-associated protein GSU0053 (Cas_GSU0053); TIGRFAM: CRISPR-associated protein GSU0053/csb1, Dpsyc system; InterPro IPR013403; KEGG: mba:Mbar_A3121 hypothetical protein; PFAM: CRISPR-associated protein GSU0053; SPTR: Putative uncharacterized protein.
  
     0.445
AFZ42701.1
PFAM: S23 ribosomal protein; TIGRFAM: TIGR02436 family protein; KEGG: pca:Pcar_1793 hypothetical protein; SPTR: S23 ribosomal protein.
  
     0.440
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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