STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ43847.1PFAM: Domain of unknown function (DUF1998); InterPro IPR018973; KEGG: ava:Ava_C0227 hypothetical protein; PFAM: Protein of unknown function DUF1998; SPTR: Putative uncharacterized protein. (637 aa)    
Predicted Functional Partners:
AFZ43848.1
PFAM: Helicase conserved C-terminal domain; InterPro IPR001650; KEGG: ava:Ava_C0226 helicase-like; PFAM: helicase domain protein; SMART: helicase domain protein; SPTR: Helicase-like.
 
     0.951
AFZ43851.1
KEGG: ava:Ava_C0223 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.769
AFZ43953.1
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
   
 
 0.617
AFZ44042.1
PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; COGs: COG1035 Coenzyme F420-reducing hydrogenase beta subunit; InterPro IPR017896:IPR007516:IPR007525; KEGG: maq:Maqu_2619 coenzyme F420 hydrogenase/dehydrogenase beta subunit; PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; SPTR: Coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein.
  
     0.533
AFZ42916.1
TIGRFAM: CRISPR type I-D/CYANO-associated protein Csc3/Cas10d; InterPro IPR017589; KEGG: ava:Ava_4170 hypothetical protein; SPTR: Similar to tr|A0YW95|A0YW95_9CYAN Hypothetical protein; TIGRFAM: CRISPR-associated protein Csc3.
  
     0.496
AFZ43148.1
KEGG: cyn:Cyan7425_3244 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.483
AFZ42798.1
Cadherin; COGs: COG5276 conserved hypothetical protein; InterPro IPR002126:IPR013211:IPR007280; KEGG: nmu:Nmul_A0927 phosphoesterase, PA-phosphatase related; PFAM: Cadherin; LVIVD repeat-containing protein; peptidase domain protein; SPTR: YD repeat protein.
  
     0.481
AFZ42921.1
PFAM: DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3, subtype CYANO; COGs: COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster; InterPro IPR017575:IPR011545:IPR014021:IPR014001; KEGG: ava:Ava_4165 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; SPTR: DEAD/DEAH box helicase-like; TIGRFAM: CRISPR-associated helicase, Cyano-type.
 
     0.478
AFZ45570.1
KEGG: cyn:Cyan7425_5316 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.439
AFZ43849.1
KEGG: cyh:Cyan8802_0621 hypothetical protein; SPTR: Helix-turn-helix protein, CopG family protein.
       0.438
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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