STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ43906.1PFAM: Domain of unknown function (DUF1823); InterPro IPR014952; KEGG: npu:Npun_R1028 hypothetical protein; PFAM: Domain of unknown function DUF1823; SPTR: Conserved domain protein. (124 aa)    
Predicted Functional Partners:
AFZ43462.1
PFAM: Protein of unknown function (DUF3146); KEGG: cyt:cce_2796 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.772
AFZ43313.1
PFAM: Protein of unknown function (DUF2997); KEGG: cyc:PCC7424_0837 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.755
AFZ44231.1
KEGG: cyt:cce_2199 hypothetical protein; SPTR: UPF0367 protein CwatDRAFT_1917.
  
     0.725
AFZ43762.1
PFAM: Hypothetical chloroplast protein Ycf34; InterPro IPR019656; KEGG: cyt:cce_3383 hypothetical protein; PFAM: Hypothetical chloroplast protein Ycf34; SPTR: Putative uncharacterized protein.
  
     0.723
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.711
AFZ42751.1
PFAM: Domain of unknown function (DUF1815); InterPro IPR014943; KEGG: cyn:Cyan7425_1036 hypothetical protein; PFAM: Domain of unknown function DUF1815; SPTR: Putative uncharacterized protein; manually curated.
  
     0.707
cpcS-3
Protein of unknown function CpeS/Ycf58; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
     0.677
psbV
Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.
  
     0.640
AFZ42307.1
PFAM: Polyketide cyclase / dehydrase and lipid transport; InterPro IPR019587; KEGG: cyc:PCC7424_0761 hypothetical protein; PFAM: Polyketide cyclase/dehydrase; SPTR: Putative uncharacterized protein.
  
     0.637
rpmF
PFAM: Ribosomal L32p protein family; InterPro IPR002677; KEGG: ana:asl3674 50S ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.631
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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