STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ43915.1KEGG: gbm:Gbem_3785 hypothetical protein; SPTR: Putative uncharacterized protein. (166 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
 0.984
AFZ44029.1
PFAM: GMC oxidoreductase; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR007867; KEGG: bav:BAV2641 capsular polysaccharide biosynthesis oxidoreductase; PFAM: GMC oxidoreductase; SPTR: GMC oxidoreductase.
    
 0.842
AFZ44143.1
Hypothetical protein; KEGG: tva:TVAG_244940 viral A-type inclusion protein; SPTR: Viral A-type inclusion protein, putative.
    
 0.833
AFZ45569.1
PFAM: WD domain, G-beta repeat; FHA domain; COGs: COG2319 FOG: WD40 repeat; InterProIPR000253:IPR019782:IPR017986:IPR019781:IPR 020472:IPR019775:IPR001680; KEGG: cyt:cce_2058 hypothetical protein; PFAM: Forkhead-associated protein; WD40 repeat, subgroup; SMART: Forkhead-associated protein; WD-40 repeat-containing protein; SPTR: Putative uncharacterized protein.
   
 0.745
AFZ42445.1
Hypothetical protein; PFAM: NB-ARC domain; InterPro IPR000767; KEGG: npu:Npun_DF002 WD-40 repeat-containing protein; SPTR: WD-repeat protein.
    
 0.743
AFZ42453.1
PFAM: Protein of unknown function (DUF3298); KEGG: amr:AM1_6347 hypothetical protein; SPTR: Putative uncharacterized protein.
    
 0.743
AFZ43055.1
PFAM: Protein kinase domain; WD domain, G-beta repeat; COGs: COG2319 FOG: WD40 repeat; InterProIPR017442:IPR019781:IPR000719:IPR019782:IPR 017986:IPR019775:IPR020635:IPR002290:IPR001680; KEGG: ter:Tery_1627 WD-40 repeat-containing serine/threonin protein kinase; PFAM: Serine/threonine-protein kinase-like domain; WD40 repeat, subgroup; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; WD-40 repeat-containing protein; SPTR: Protein kinase domain.
    
 0.743
AFZ43622.1
KEGG: ter:Tery_0310 hypothetical protein; SPTR: Putative uncharacterized protein.
    
 0.743
AFZ43911.1
KEGG: cyc:PCC7424_3879 hypothetical protein; SPTR: Putative membrane protein.
    
 0.743
AFZ44696.1
WD-40 repeat-containing protein; PFAM: WD domain, G-beta repeat; COGs: COG2319 FOG: WD40 repeat; InterPro IPR019782:IPR017986:IPR001680:IPR019781; KEGG: npu:Npun_R3840 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SPTR: WD-40 repeat protein.
    
 0.743
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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