STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ44093.1PFAM: TrkA-N domain; InterPro IPR003148:IPR006037; KEGG: cyh:Cyan8802_4477 TrkA-N domain protein; PFAM: TrkA-N domain protein; SPTR: TrkA-N domain protein. (688 aa)    
Predicted Functional Partners:
AFZ44952.1
KEGG: cyc:PCC7424_2214 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.756
AFZ45682.1
PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family; COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR004772:IPR003445; KEGG: ana:all1802 hypothetical protein; PFAM: cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: Cation transport protein, putative; TIGRFAM: potassium uptake protein, TrkH family.
  
 
 0.713
AFZ45038.1
PFAM: DnaJ domain; InterPro IPR001623; KEGG: cyh:Cyan8802_3165 heat shock protein DnaJ domain protein; PFAM: heat shock protein DnaJ domain protein; SPTR: Heat shock protein DnaJ, N-terminal.
  
   
 0.651
AFZ44731.1
KEGG: syp:SYNPCC7002_A2518 hypothetical protein; SPTR: Hypothetical membrane protein; manually curated.
  
     0.610
AFZ44092.1
PFAM: NAD dependent epimerase/dehydratase family; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR006142:IPR006141:IPR004042:IPR001509; KEGG: syp:SYNPCC7002_A2339 dTDP-glucose 4-6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: dTDP-glucose 4-6-dehydratase.
  
    0.573
AFZ43595.1
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.532
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
    0.530
AFZ42794.1
Pyruvate ferredoxin/flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
  
 
 0.490
AFZ44706.1
KEGG: amr:AM1_3060 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.488
psbY
Photosystem II protein PsbY; Manganese-binding polypeptide with L-arginine metabolizing enzyme activity. Component of the core of photosystem II. Belongs to the PsbY family.
  
     0.481
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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