STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ44143.1Hypothetical protein; KEGG: tva:TVAG_244940 viral A-type inclusion protein; SPTR: Viral A-type inclusion protein, putative. (509 aa)    
Predicted Functional Partners:
AFZ44018.1
PFAM: Histone deacetylase domain; COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: cyh:Cyan8802_1375 histone deacetylase; PFAM: histone deacetylase superfamily; SPTR: Histone deacetylase superfamily.
    
 0.924
AFZ44083.1
PFAM: Histone deacetylase domain; COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: cyb:CYB_0948 histone deacetylase family protein; PFAM: histone deacetylase superfamily; PRIAM: Histone deacetylase; SPTR: Histone deacetylase family protein.
    
 0.924
AFZ42606.1
PFAM: Dual specificity phosphatase, catalytic domain; InterPro IPR016130:IPR000387:IPR000340:IPR020422; KEGG: cyn:Cyan7425_3344 dual specificity protein phosphatase; PFAM: Dual specificity protein phosphatase; SMART: Dual specificity phosphatase, subgroup, catalytic domain; SPTR: Dual specificity protein phosphatase.
  
 0.855
AFZ43915.1
KEGG: gbm:Gbem_3785 hypothetical protein; SPTR: Putative uncharacterized protein.
    
 0.833
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.811
AFZ42989.1
Hypothetical protein; PFAM: Metallo-beta-lactamase superfamily; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR001307; KEGG: ana:all3220 hypothetical protein; SPTR: All3220 protein.
    
 0.782
AFZ42461.1
Hypothetical protein; COGs: COG1196 Chromosome segregation ATPase; KEGG: npu:Npun_R5959 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
 0.760
AFZ42371.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: intein N-terminal splicing region; intein C-terminal splicing region; DNA gyrase, B subunit; COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR011557:IPR006141:IPR018522:IPR000565:IPR 001241:IPR003594:IPR013506:IPR006171:IPR002288:IPR003587:I PR003586; KEGG: hwa:HQ2652A DNA gyrase / DNA topoisomerase II subunit B; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain p [...]
   
 
 0.750
AFZ42719.1
Gas vesicle protein GvpC; InterPro IPR002003; KEGG: mar:MAE_37620 gas vesicle structural protein; SPTR: Gas vesicle protein GVPc; TIGRFAM: gas vesicle protein GvpC.
  
     0.740
AFZ43223.1
Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.644
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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