STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ44174.1Allophycocyanin alpha subunit apoprotein; PFAM: Phycobilisome protein; InterPro IPR012128; KEGG: tel:tll0957 allophycocyanin alpha subunit; PFAM: Phycocyanin; SPTR: Allophycocyanin alpha subunit. (161 aa)    
Predicted Functional Partners:
AFZ44172.1
CpcD phycobilisome linker domain protein; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
 
 
 0.999
AFZ42419.1
PFAM: Phycobilisome protein; Phycobilisome Linker polypeptide; InterPro IPR001297:IPR012128; KEGG: cyn:Cyan7425_5149 phycobilisome linker polypeptide; PFAM: Phycobilisome linker polypeptide; Phycocyanin; SPTR: Phycobilisome protein; Belongs to the phycobilisome linker protein family.
 
 
 0.998
AFZ44173.1
Allophycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: allophycocyanin, beta subunit; InterPro IPR006245:IPR012128; KEGG: cyt:cce_2909 allophycocyanin beta subunit; PFAM: Phycocyanin; SPTR: Allophycocyanin b chain; TIGRFAM: allophycocyanin, beta subunit.
 
 
0.996
AFZ43164.1
Allophycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: allophycocyanin, beta subunit; InterPro IPR006245:IPR012128; KEGG: cyh:Cyan8802_0836 allophycocyanin, beta subunit; PFAM: Phycocyanin; SPTR: Phycobilisome core component; TIGRFAM: allophycocyanin, beta subunit.
 
 
0.992
AFZ44719.1
Allophycocyanin alpha-B subunit apoprotein; PFAM: Phycobilisome protein; InterPro IPR012128; KEGG: cyn:Cyan7425_1034 phycobilisome protein; PFAM: Phycocyanin; SPTR: Phycobilisome protein.
  
 
 
0.989
AFZ43249.1
PFAM: Phycobilisome Linker polypeptide; InterPro IPR001297:IPR016470; KEGG: cyc:PCC7424_3508 phycobilisome linker polypeptide; PFAM: Phycobilisome linker polypeptide; SPTR: Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
 
 0.979
AFZ45328.1
PFAM: Phycobilisome Linker polypeptide; CpcD/allophycocyanin linker domain; InterPro IPR008213:IPR001297:IPR016470; KEGG: tel:tlr1959 phycobilisome rod linker polypeptide; PFAM: Phycobilisome linker polypeptide; CpcD phycobilisome linker domain protein; SPTR: Phycocyanin-associated rod linker protein; Belongs to the phycobilisome linker protein family.
  
 
 
 0.974
AFZ45329.1
Phycocyanin, alpha subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, alpha subunit; InterPro IPR006246:IPR012128; KEGG: cyt:cce_2652 phycocyanin alpha subunit; PFAM: Phycocyanin; SPTR: Phycocyanin a subunit; TIGRFAM: phycocyanin, alpha subunit.
  
 
 
0.942
AFZ45330.1
Phycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, beta subunit; InterPro IPR006247:IPR012128; KEGG: ava:Ava_2930 phycocyanin, beta subunit; PFAM: Phycocyanin; SPTR: C-phycocyanin beta chain; TIGRFAM: phycocyanin, beta subunit.
  
 
 
0.931
cpcS-4
Protein of unknown function CpeS/Ycf58; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
   
 0.838
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
Server load: low (28%) [HD]
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