STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ44244.1KEGG: amr:AM1_B0049 hypothetical protein; SPTR: Putative uncharacterized protein. (156 aa)    
Predicted Functional Partners:
AFZ44245.1
PFAM: Mechanosensitive ion channel; COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: cyt:cce_1820 small mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: Putative uncharacterized protein.
       0.768
AFZ44246.1
PFAM: Mechanosensitive ion channel; COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: cyc:PCC7424_1410 MscS mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: Membrane protein, putative.
       0.696
AFZ44247.1
Sodium/proton antiporter, CPA1 family; PFAM: Universal stress protein family; Sodium/hydrogen exchanger family; COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR006015:IPR006153:IPR006016; KEGG: ava:Ava_0089 sodium/hydrogen exchanger; PFAM: sodium/hydrogen exchanger; UspA domain-containing protein; SPTR: Sodium/hydrogen exchanger; TC 2.A.36.
       0.518
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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