STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ44398.1KEGG: nwa:Nwat_1966 hypothetical protein; SPTR: Genome sequencing data, contig C317. (79 aa)    
Predicted Functional Partners:
AFZ44397.1
KEGG: rrs:RoseRS_3426 hypothetical protein; SPTR: Genome sequencing data, contig C317.
 
     0.951
AFZ44399.1
KEGG: ana:asl0281 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.548
AFZ42281.1
PFAM: Stage II sporulation protein E (SpoIIE); KEGG: dac:Daci_4196 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.482
AFZ44400.1
Hypothetical protein.
       0.438
AFZ45884.1
TIGRFAM: conserved hypothetical protein (putative transposase or invertase); InterPro IPR010106; KEGG: mar:MAE_01030 hypothetical protein; SPTR: Genome sequencing data, contig C299.
  
     0.405
AFZ42648.1
Adenine specific DNA methyltransferase; PFAM: N-6 DNA Methylase; COGs: COG4889 helicase; InterPro IPR002052:IPR002296; KEGG: cyp:PCC8801_1662 adenine specific DNA methyltransferase; SPTR: Adenine specific DNA methyltransferase.
  
     0.400
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.