STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ44883.1CAB/ELIP/HLIP superfamily protein; PFAM: Chlorophyll A-B binding protein; KEGG: syp:SYNPCC7002_A0602 CAB/ELIP/HLIP superfamily protein; SPTR: CAB/ELIP/HLIP superfamily protein. (68 aa)    
Predicted Functional Partners:
AFZ45588.1
PFAM: CO2 hydration protein (ChpXY); TIGRFAM: CO2 hydration protein; InterPro IPR010220; KEGG: cyc:PCC7424_1100 CO2 hydration protein; PFAM: CO2 hydration family protein; SPTR: CO2 hydration protein; TIGRFAM: CO2 hydration protein.
  
     0.570
AFZ44884.1
PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342:IPR018110; KEGG: cyc:PCC7424_3588 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing protein; SPTR: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein.
       0.550
AFZ44885.1
PFAM: Protein of unknown function (DUF1611); COGs: COG3367 conserved hypothetical protein; InterPro IPR011669; KEGG: cyt:cce_1278 hypothetical protein; PFAM: protein of unknown function DUF1611; SPTR: DUF1611-containing protein.
       0.550
AFZ42474.1
Hypothetical protein; InterPro IPR012902; KEGG: cyc:PCC7424_1865 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
  
     0.520
AFZ42518.1
PFAM: Homing endonuclease; TIGRFAM: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent; COGs: COG1372 Intein/homing endonuclease; InterProIPR013345:IPR006141:IPR004042:IPR006142:IPR 003587; KEGG: ana:all4035 hypothetical protein; SMART: Hedgehog/intein hint domain protein; SPTR: All4035 protein; TIGRFAM: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent.
  
     0.520
AFZ42475.1
KEGG: cyc:PCC7424_1866 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.501
AFZ42876.1
KEGG: ava:Ava_0195 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.453
AFZ45338.1
PFAM: Predicted periplasmic protein (DUF2233); KEGG: cyc:PCC7424_0303 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.434
AFZ42926.1
KEGG: cyc:PCC7424_3816 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.418
AFZ42978.1
PFAM: MOSC N-terminal beta barrel domain; MOSC domain; COGs: COG3217 Uncharacterized Fe-S protein; InterPro IPR005302; KEGG: cyc:PCC7424_1030 MOSC domain protein beta barrel domain protein; PFAM: MOSC domain containing protein; SPTR: MOSC domain protein beta barrel domain protein.
  
     0.409
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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