STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ45461.1PFAM: MerR family regulatory protein; Resolvase, N terminal domain; TIGRFAM: DNA binding domain, excisionase family; COGs: COG2452 site-specific integrase-resolvase; InterPro IPR006118:IPR010093:IPR000551:IPR006119; KEGG: ter:Tery_3670 DNA binding domain-containing protein; PFAM: regulatory protein MerR; Resolvase domain; SPTR: DNA binding domain, excisionase family; TIGRFAM: DNA binding domain protein, excisionase family. (107 aa)    
Predicted Functional Partners:
AFZ43046.1
PFAM: Resolvase, N terminal domain; COGs: COG2452 site-specific integrase-resolvase; InterPro IPR006119; KEGG: mar:MAE_30000 resolvase-like protein; PFAM: Resolvase domain; SPTR: Resolvase-like protein.
  
     0.774
AFZ45460.1
Transposase, IS605 OrfB family; PFAM: Helix-turn-helix domain; Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR010095:IPR001959; KEGG: cyc:PCC7424_4920 transposase, IS607 family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; SPTR: Transposase, IS605 OrfB family; TIGRFAM: transposase, IS605 OrfB family.
 
     0.709
AFZ45462.1
PFAM: CobN/Magnesium Chelatase; TIGRFAM: cobaltochelatase, CobN subunit; COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR011953:IPR003672; KEGG: cyt:cce_4752 cobaltochelatase; PFAM: CobN/magnesium chelatase; PRIAM: Cobaltochelatase; SPTR: Cobaltochelatase, CobN subunit; TIGRFAM: cobaltochelatase, CobN subunit.
       0.558
AFZ45420.1
Transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR010095:IPR001959; KEGG: cya:CYA_0345 ISSoc2, transposase; PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family; SPTR: Transposase, IS605 OrfB family; TIGRFAM: transposase, IS605 OrfB family; manually curated.
  
     0.543
AFZ43597.1
Transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: cya:CYA_0345 ISSoc2, transposase; PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family; SPTR: Transposase, IS605 OrfB family; TIGRFAM: transposase, IS605 OrfB family; manually curated.
  
     0.527
AFZ45794.1
Transposase IS605 OrfB; PFAM: Putative transposase DNA-binding domain; Probable transposase; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: ava:Ava_B0077 IS891/IS1136/IS1341 transposase; PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family; SPTR: Transposase, IS891/IS1136/IS1341.
  
     0.515
AFZ45463.1
Tetratricopeptide TPR_1 repeat-containing protein; PFAM: Tetratricopeptide repeat; InterPro IPR019734:IPR013026:IPR001440; KEGG: ptm:GSPATT00038644001 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR domain protein.
       0.401
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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