STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ45553.1KEGG: sun:SUN_1865 hypothetical protein; SPTR: Putative uncharacterized protein. (181 aa)    
Predicted Functional Partners:
AFZ45552.1
PFAM: OB-fold nucleic acid binding domain; TIGRFAM: intein C-terminal splicing region; COGs: COG0587 DNA polymerase III alpha subunit; InterPro IPR006141:IPR004365:IPR003586; KEGG: mar:MAE_37530 DNA polymerase III subunit alpha; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; SMART: Hedgehog/intein hint domain protein; SPTR: Similar to tr|Q4C9K6|Q4C9K6_CROWT Protein splicing.
       0.727
AFZ45554.1
Peptidylprolyl isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179:IPR013838; KEGG: cyc:PCC7424_0506 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; PRIAM: Peptidylprolyl isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase.
       0.522
AFZ45555.1
COGs: COG3937 conserved hypothetical protein; KEGG: cyh:Cyan8802_3187 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.478
argS
arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase; COGs: COG0018 Arginyl-tRNA synthetase; InterProIPR015945:IPR001278:IPR001412:IPR005148:IPR 008909; KEGG: syp:SYNPCC7002_A0599 arginyl-tRNA synthetase; PFAM: Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; DALR anticodon binding domain protein; PRIAM: Arginine--tRNA ligase; SPTR: Arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase.
       0.424
AFZ45556.1
PFAM: NmrA-like family; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: cyc:PCC7424_5164 NmrA family protein; SPTR: NmrA family protein.
       0.416
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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