STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ45759.1TIGRFAM: DNA binding domain, excisionase family; InterPro IPR010093:IPR000551; KEGG: tjr:TherJR_0147 DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; SPTR: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain protein, excisionase family. (62 aa)    
Predicted Functional Partners:
AFZ45760.1
DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525:IPR018117; KEGG: smf:Smon_1245 DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase.
       0.773
AFZ45757.1
KEGG: amr:AM1_D0102 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.417
AFZ45758.1
Addiction module killer protein; PFAM: Phage derived protein Gp49-like (DUF891); TIGRFAM: putative addiction module killer protein; COGs: COG3657 conserved hypothetical protein; InterPro IPR014056:IPR009241; KEGG: amr:AM1_D0103 hypothetical protein; PFAM: protein of unknown function DUF891; SPTR: Putative uncharacterized protein; TIGRFAM: addiction module killer protein.
       0.417
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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