STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ45850.1PFAM: Major Facilitator Superfamily; COGs: COG2211 Na+/melibiose symporter and related transporter; InterPro IPR011701; KEGG: cyt:cce_4761 putative major facilitator superfamily protein; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily (MFS) transporter. (468 aa)    
Predicted Functional Partners:
AFZ45849.1
Small GTP-binding protein; PFAM: GTPase of unknown function; Domain of unknown function (DUF697); TIGRFAM: small GTP-binding protein domain; COGs: COG1100 GTPase SAR1 and related small G protein; InterPro IPR005225:IPR002917; KEGG: cyt:cce_0071 hypothetical protein; PFAM: GTP-binding protein HSR1-related; SPTR: Putative uncharacterized protein; TIGRFAM: small GTP-binding protein.
       0.553
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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