STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ45965.1UspA domain-containing protein; PFAM: Universal stress protein family; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016:IPR006015; KEGG: cyh:Cyan8802_3655 UspA domain protein; PFAM: UspA domain-containing protein; SPTR: UspA domain protein. (282 aa)    
Predicted Functional Partners:
AFZ44159.1
PFAM: PBS lyase HEAT-like repeat; InterPro IPR021133:IPR004155:IPR000357; KEGG: cyp:PCC8801_3073 heat domain containing protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; HEAT domain containing protein; SPTR: PBS lyase HEAT-like repeat domain protein.
  
     0.724
AFZ44617.1
PBS lyase HEAT domain protein repeat-containing protein; PFAM: PBS lyase HEAT-like repeat; COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155; KEGG: cyt:cce_2656 phycocyanin alpha phycocyanobilin lyase; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; SPTR: Phycocyanin alpha phycocyanobilin lyase.
  
     0.683
AFZ45328.1
PFAM: Phycobilisome Linker polypeptide; CpcD/allophycocyanin linker domain; InterPro IPR008213:IPR001297:IPR016470; KEGG: tel:tlr1959 phycobilisome rod linker polypeptide; PFAM: Phycobilisome linker polypeptide; CpcD phycobilisome linker domain protein; SPTR: Phycocyanin-associated rod linker protein; Belongs to the phycobilisome linker protein family.
  
     0.647
AFZ42419.1
PFAM: Phycobilisome protein; Phycobilisome Linker polypeptide; InterPro IPR001297:IPR012128; KEGG: cyn:Cyan7425_5149 phycobilisome linker polypeptide; PFAM: Phycobilisome linker polypeptide; Phycocyanin; SPTR: Phycobilisome protein; Belongs to the phycobilisome linker protein family.
  
     0.635
AFZ45874.1
PBS lyase HEAT domain protein repeat-containing protein; PFAM: PBS lyase HEAT-like repeat; COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155; KEGG: cyp:PCC8801_1381 PBS lyase heat domain protein repeat-containing protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SPTR: PBS lyase HEAT domain protein repeat-containing protein.
  
     0.628
AFZ44172.1
CpcD phycobilisome linker domain protein; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
     0.619
AFZ45327.1
PFAM: CpcD/allophycocyanin linker domain; InterPro IPR008213; KEGG: naz:Aazo_3486 CpcD phycobilisome linker domain-containing protein; PFAM: CpcD phycobilisome linker domain protein; SPTR: CpcD phycobilisome linker-like protein.
  
     0.604
AFZ44719.1
Allophycocyanin alpha-B subunit apoprotein; PFAM: Phycobilisome protein; InterPro IPR012128; KEGG: cyn:Cyan7425_1034 phycobilisome protein; PFAM: Phycocyanin; SPTR: Phycobilisome protein.
  
     0.576
AFZ44464.1
PFAM: Oxygen evolving enhancer protein 3 (PsbQ); TIGRFAM: photosystem II protein PsbQ; InterPro IPR017487; KEGG: cyc:PCC7424_0198 photosystem II protein PsbQ; SPTR: Photosystem II extrinsic protein PsbQ; TIGRFAM: photosystem II protein PsbQ.
  
     0.572
AFZ44174.1
Allophycocyanin alpha subunit apoprotein; PFAM: Phycobilisome protein; InterPro IPR012128; KEGG: tel:tll0957 allophycocyanin alpha subunit; PFAM: Phycocyanin; SPTR: Allophycocyanin alpha subunit.
  
     0.552
Your Current Organism:
Halothece sp. PCC7418
NCBI taxonomy Id: 65093
Other names: Aphanothece halophytica 7418, Cyanothece sp. PCC 7418, H. sp. PCC 7418, Halothece sp. PCC 7418, Synechococcus sp. ATCC 29534 (no longer available), Synechococcus sp. PCC 7418
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