Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCK78204.1Uncharacterized protein related to metal-dependent hydrolase/oxidoreductase; Signal peptide. (365 aa)    
Predicted Functional Partners:
CCK78202.1
Uncharacterized protein related to Pyridoxamine 5'-phosphate oxidase.
       0.773
ppsA
PpsA: phosphoenolpyruvate synthase/pyruvate phosphate dikinase (PEP synthase).
       0.773
CCK81829.1
Amino acid adenylation domain protein.
 
  
 0.675
psd
Psd: phosphatidylserine decarboxylase proenzyme (alpha and beta chain); Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
 
 
   0.560
CCK80822.1
CDP-alcohol phosphatidyltransferase; Signal peptide; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
 
 
 0.524
CCK78201.1
Conserved uncharacterized protein related to NAD-dependent epimerase/dehydratase.
  
  
 0.511
dinB
DinB: DNA-directed DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. Belongs to the DNA polymerase type-Y family.
 
     0.423
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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