Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpmBRpmB: 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (64 aa)    
Predicted Functional Partners:
rpmF
RpmF: 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.992
rpmG
RpmG: 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.992
rpsO
RpsO: 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
 0.991
rpsT
RpsT: 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.991
rpsF
RpsF: 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
 0.991
rpsR
RpsR: 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.991
rplU
RplU: 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.991
rpsZ
RpsZ: 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.991
rpsU
RspU: 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.990
rplS
RplS: 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.990
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.