Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CCK81004.1 | fur | TOL2_C28440 | TOL2_C05780 | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | Fur: ferric uptake regulator. | 0.462 |
| CCK81004.1 | trxA | TOL2_C28440 | TOL2_C00650 | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | TrxA: Thioredoxin; Belongs to the thioredoxin family. | 0.727 |
| arsC | trxA | TOL2_C07620 | TOL2_C00650 | ArsC: predicted arsenate reductase (glutaredoxin); Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | TrxA: Thioredoxin; Belongs to the thioredoxin family. | 0.701 |
| arsC | trxB | TOL2_C07620 | TOL2_C00640 | ArsC: predicted arsenate reductase (glutaredoxin); Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | TrxB: thioredoxin reductase. | 0.773 |
| bamD | fur | TOL2_C00630 | TOL2_C05780 | Putative DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Fur: ferric uptake regulator. | 0.443 |
| bamD | rpmB | TOL2_C00630 | TOL2_C00620 | Putative DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | RpmB: 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.621 |
| bamD | trxA | TOL2_C00630 | TOL2_C00650 | Putative DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | TrxA: Thioredoxin; Belongs to the thioredoxin family. | 0.835 |
| bamD | trxB | TOL2_C00630 | TOL2_C00640 | Putative DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | TrxB: thioredoxin reductase. | 0.828 |
| flgK | fliA | TOL2_C35520 | TOL2_C35660 | FlgK: putative flagellar hook-associated protein 1; Belongs to the flagella basal body rod proteins family. | FliA: RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.936 |
| flgK | fliD | TOL2_C35520 | TOL2_C35450 | FlgK: putative flagellar hook-associated protein 1; Belongs to the flagella basal body rod proteins family. | FliD: predicted flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.962 |
| flgK | trxA | TOL2_C35520 | TOL2_C00650 | FlgK: putative flagellar hook-associated protein 1; Belongs to the flagella basal body rod proteins family. | TrxA: Thioredoxin; Belongs to the thioredoxin family. | 0.692 |
| fliA | flgK | TOL2_C35660 | TOL2_C35520 | FliA: RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | FlgK: putative flagellar hook-associated protein 1; Belongs to the flagella basal body rod proteins family. | 0.936 |
| fliA | fliD | TOL2_C35660 | TOL2_C35450 | FliA: RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | FliD: predicted flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.847 |
| fliA | trxA | TOL2_C35660 | TOL2_C00650 | FliA: RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | TrxA: Thioredoxin; Belongs to the thioredoxin family. | 0.658 |
| fliD | flgK | TOL2_C35450 | TOL2_C35520 | FliD: predicted flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | FlgK: putative flagellar hook-associated protein 1; Belongs to the flagella basal body rod proteins family. | 0.962 |
| fliD | fliA | TOL2_C35450 | TOL2_C35660 | FliD: predicted flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | FliA: RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.847 |
| fliD | trxA | TOL2_C35450 | TOL2_C00650 | FliD: predicted flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | TrxA: Thioredoxin; Belongs to the thioredoxin family. | 0.653 |
| fur | CCK81004.1 | TOL2_C05780 | TOL2_C28440 | Fur: ferric uptake regulator. | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | 0.462 |
| fur | bamD | TOL2_C05780 | TOL2_C00630 | Fur: ferric uptake regulator. | Putative DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.443 |
| fur | groL | TOL2_C05780 | TOL2_C13490 | Fur: ferric uptake regulator. | GroL: 60kDa chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.434 |
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