Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
rbrRbr: rubrerythrin. (191 aa)    
Predicted Functional Partners:
dfx
Dfx: desulfoferredoxin.
 
  
 0.709
roo
Roo: rubredoxin-oxygen oxidoreductase.
 
  
 0.554
trxB
TrxB: thioredoxin reductase.
     
 0.517
prxU
PrxU: selenocysteine-containing peroxiredoxin.
  
  
 0.517
trxA
TrxA: Thioredoxin; Belongs to the thioredoxin family.
  
  
 0.480
rrx2
Rrx2: predicted rubredoxin associated with rubredoxin-oxygen oxidoreductase Roo.
 
  
 0.464
fur
Fur: ferric uptake regulator.
  
  
 0.453
bamD
Putative DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
       0.443
msrAB
MsrAB: peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.413
CCK78424.1
Uncharacterized protein.
  
  
 0.408
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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