Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
padI1PadI1: phenylglyoxylate:acceptor oxidoreductase, subunit I. (319 aa)    
Predicted Functional Partners:
padG1
PadG1: phenylglyoxylate:acceptor oxidoreductase, subunit G.
 0.999
padE1
PadE1: phenylglyoxylate:acceptor oxidoreductase, subunit E.
 
 0.997
porA
PorA: pyruvate synthase, alpha subunit.
 
 0.991
padG2
PadG2: phenylglyoxylate:acceptor oxidoreductase, subunit G.
 
 0.991
nifJ
NifJ: pyruvate-flavodoxin oxidoreductase.
  
 
 0.974
padF1
PadF1: phenylglyoxylate:acceptor oxidoreductase, subunit F.
 
 
 0.973
korA3
KorA3: 2-oxoglutarate synthase, alpha subunit.
 
 
 0.957
padE2
PadE2: phenylglyoxylate:acceptor oxidoreductase, subunit E.
 
 
 0.908
padF2
PadF2: phenylglyoxylate:acceptor oxidoreductase, subunit F.
 
 
 0.896
korA2
KorA2: 2-oxoglutarate synthase, subunit A.
 
 
 0.733
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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