Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCK78507.1Putative membrane protein. (364 aa)    
Predicted Functional Partners:
CCK78508.1
Response regulator, SirA family; Belongs to the sulfur carrier protein TusA family.
 
  
 0.975
CCK78509.1
Conserved uncharacterized protein.
 
    0.938
CCK78510.1
Conserved uncharacterized protein related to carbohydrate kinase.
 
    0.938
CCK78511.1
Conserved uncharacterized protein.
       0.707
CCK78743.1
SirA family protein; Belongs to the sulfur carrier protein TusA family.
 
  
 0.697
CCK82542.1
Conserved uncharacterized protein, related to SirA; Belongs to the sulfur carrier protein TusA family.
  
  
 0.452
selB
SelB: selenocysteine-specific elongation factor.
 
   
 0.425
CCK79207.1
Conserved uncharacterized protein.
  
     0.411
radA
RadA: DNA repair protein radA homolog; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
  
    0.410
trpB
TrpB: tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.401
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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