Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
bamB1BamB1: aldehyde:ferredoxin oxidoreductase. (668 aa)    
Predicted Functional Partners:
bamC1
BamC1: 4Fe-4S ferredoxin.
 
 0.996
CCK81978.1
enoyl-CoA hydratase/isomerase related to dienoyl-CoA hydratase.
     
 0.900
CCK82302.1
4Fe-4S ferredoxin iron-sulfur binding protein.
 
 
 0.869
bamC3
BamC3: 4Fe-4S ferredoxin.
 
 
 
 0.864
bamC2
BamC2: 4Fe-4S ferredoxin.
 
 
 0.848
bamH1
BamH1: NADH-quinone oxidoreductase, subunit F.
   
   0.830
bamH3
BamH3: NADH-quinone oxidoreductase, subunit F.
    
   0.793
bamF1
BamF1:coenzyme F420 non-reducing hydrogenase, delta subunit.
 
     0.781
bamE1
BamE1: predicted heterodisulfide reductase, iron-sulfur subunit A.
 
     0.779
oah
Oah: predicted 6-oxo-cyclohex-1-ene-carbonyl-CoA hydrolase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
   
 0.730
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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