Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CCK78757.1Tetratricopeptide repeat protein; Signal peptide. (251 aa)    
Predicted Functional Partners:
thrC
ThrC: threonine synthase.
 
     0.823
CCK78758.1
LysM domain protein.
       0.797
serS
SerC: seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.797
CCK80014.1
Tetratricopeptide (TRP1+2) repeat protein; Signal peptide.
 
     0.691
pilQ
PilQ: type IV pilus secretin; Belongs to the bacterial secretin family.
 
   
 0.616
CCK81831.1
Tetratricopeptide repeat protein.
 
     0.599
polA
PolA: DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.557
CCK78761.1
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.538
CCK80426.1
Tetratricopeptide repeat protein; Signal peptide.
 
     0.510
CCK80427.1
Tetratricopeptide repeat protein.
 
     0.496
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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