Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCK78780.1Putative transposase, IS3 family. (162 aa)    
Predicted Functional Partners:
CCK78781.1
Putative integrase, fragment.
 
     0.946
CCK78358.1
Putative transposase, fragment.
  
     0.775
CCK80251.1
Uncharacterized protein.
  
     0.775
CCK79585.1
Predicted integrase.
  
     0.774
CCK80772.1
Transposase.
  
     0.774
CCK80786.1
Transposase.
  
     0.774
CCK80808.1
Transposase.
  
     0.774
blc
Blc: outer membrane transporter, lipocalin family; Signal peptide.
       0.620
CCK78778.1
Uncharacterized protein.
       0.556
chlI
ChlI: Mg chelatase homolog, subunit ChlI.
       0.482
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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